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Exact(7)
A genetic map was produced for each mapping population using JoinMap software to estimate linkage, map order, and distance.
MSTMap was run with the objective function COUNT to estimate map order and Kosambi mapping function to assign genetic distances.
A third factor likely contributing to discrepancies in map order and lengths is genotyping error (Hackett and Broadfoot 2003).
Meaning, the model considers that genome assembly errors create rare spurious breakpoints between the RH map order and the current goat genome assembly order [ 12].
Equivalently, we consider that genome assembly errors create rare spurious breakpoints between the RH map order and the current assembly order.
There are 885 marker loci in common between the BovGen RH and the MARC 2004 linkage map [ 3] which allows a detailed comparison of map order and chromosome assignment.
Similar(53)
High missing values affected the map orders and reduced the map accuracy [ 40].
Alignments of the WGS scaffolds to the optical map ordered and oriented them for tiling the ALLPATHS scaffolds.
The map orders and genetic distances were determined using the build option in the CRIMAP software version 2.4 [ 7].
In the course of this study, three factors emerged as evident causes of discrepancies in map orders and lengths between RG and ML methods and among families.
We attempted to resolve discrepancies in map orders and marker distances between RG and ML maps by focusing, first, on biparentally segregating framework markers and then on a set of well-spaced anchor loci.
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