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Development of a genetic linkage map of rye with 183 markers was reported by Korzun et al. [ 40].
A consensus map of rye based on data from five mapping populations was published recently by Gustafson et al. [ 31].
The large extent of synteny between grass genomes will facilitate the construction of a virtual gene map of rye representing the ancestral gene scaffold.
Bednarek et al. [ 41] presented a genetic map of rye containing 480 markers including 200 RFLPs, 179 AFLPs, 88 RAPDs and 13 proteins.
To date, a high-resolution linkage map of rye has not been established owing to its large genome (approximately 9000 Mb) [ 32], high content of repetitive sequences and the insufficiency of molecular markers.
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DArTs turned out to be highly efficient also in genetic mapping of rye.
However, only some of them were located on the genetic maps of rye [ 15] and triticale [ 19].
In silico mapping of rye ESTs to the model genome of Brachypodium revealed an even distribution of rye transcripts when anchored to their Brachypodium homologs.
Several genetic maps of rye have been published so far [ 1- 4], but the possibilities of their practical application are rather limited, mainly due to an insufficient saturation.
The chromosomal locations of candidate markers were verified based on known assignments of SSRs and DArTs or by using genetic maps of rye and triticale.
Involvement of genetic maps of rye and triticale allowed the grouping of markers according to their chromosomal positions and the identification of specific genomic regions (possibly QTLs) that could be involved in the expression of the trait.
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