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Nevertheless, this study provides the first genome-wide map of putative signatures of selection in the porcine genome.
As a result, we obtained a catalog of variations within our patient cohort and we provide a map of putative transcription factor binding sites (table 2 and supplementary table S1).
Here we present a map of putative transcription factor binding sites (TFBS) identified within NUS, predicted using the TRANSFAC database (Additional file 4, Fig. S4).
To further understand their functional organization, we deduced and analyzed a map of putative CCCTC-binding factor (CTCF -binding sites within the Ushg1-Otop2 loCTCF -binding
This analysis of the targets created a map of putative signalling components (Supplementary Figure S5), which was further investigated with respect to cell proliferation, cell death and senescence using PUBMED annotations, as well as the IPA knowledge database (Table 2).
To facilitate the study of microRNA lncRNA interactions, we implemented miRcode: a comprehensive searchable map of putative microRNA target sites across the complete GENCODE annotated transcriptome, including 10 419 lncRNA genes in the current version.
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For example, applying ChIP-seq to histone modifications such as H3K4me1 has facilitated generating epigenomic maps of putative enhancers.
Mapping of putative novel transcripts from A. stephensi on the A. gambiae genome proved fruitful in identification and annotation of several genes.
Fluorescent in situ hybridization (FISH) mapping of putative protonephridial slc genes against the two markers and general tubule anatomy (e.g., branched vs coiled PT segments) revealed a significantly greater complexity of protonephridial cell types than previously appreciated.
The mapping of putative transmembrane helices (TMHs) in the identified proteins was carried out using the transmembrane hidden Markov model (TMHMM) algorithm, available at http://www.cbs.dtu.dk/services/TMHMM.dtu.dk/services/TMHMM
In this study we report on the identification of strong sources of host resistance to M. phaseolina and the genetic mapping of putative resistance loci on a cowpea genetic map comprised of gene-derived single nucleotide polymorphisms (SNPs) and amplified fragment length polymorphisms (AFLPs).
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