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Then, the overlaid degree of the link in the group map or difference map is visualized as the thickness of the link as shown in Fig. 5.
The map is visualized using the Google map engine, due to its very large size, and provides a range of detailed information in a dynamic presentation format.
Similar(58)
This analysis was performed using Cluster [110] and the resulting expression map was visualized with TreeView [110].
Pairwise LD was estimated using the correlation coefficient (r2) and the LD map was visualized using the snp.plotter R package [55] and was used to identify LD blocks within gene regions.
Meta-analysis of our proteomics data and the prostate cancer tissue microarray data was performed using MCM [26], and the heat map was visualized with the genes ranked based on their P- values.
The cluster analysis was performed on the basis of the ΔΔCT log values, and the resulting expression map was visualized with Treeview using the average-linkage clustering algorithms (Eisen Lab, Stanford University, CA, USA).
The genome map was visualized using the MapSolver software (Opgen).
The resulting expression map was visualized using Java Treeview 1.1.6r2 [ 36].
Heat map was visualized by using Maple Tree (http://rana.lbl.gov/EisenSoftware.htm).htm
The comparative physical map was visualized using Circos v0.55 (http://circos.ca).
The electrostatic potential map was visualized by UCSF Chimera using the built-in electrostatic surface coloring module.
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