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Using the bin map converted from the ultrahigh-quality physical map associated with the culm length (CL) of the 128 CSSLs, the QTL analysis mapped nine QTLs, explaining 89.50% of the phenotypic variance for CL.
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Third, using the 128 CSSLs combined with the bin-map converted from the sequencing-based physical map, a multiple linear regression QTL analysis mapped nine QTLs, which explained 89.50% of the phenotypic variance for culm length.
Finally, each map was converted from Haldane to Kosambi map units prior to merging.
Phase and correlation maps were converted from individual surface space to the standard-mesh surface to generate group average data.
Figure 3 shows a colour-coded heat map that was converted from the relative expression ratios (signal intensity from Ph-infected vs. mock-inoculated controls) of the 802 genes and the 58 (24 + 34) line-specific genes showing the overall similarity and specificity of gene expression in L94 and Vada.
In addition, FPKM (fragments per kilobase of exon per million fragments mapped) values were converted from count values for comparing expression levels among genes.
The conversion system makes it possible to automatically convert vector maps between different mapping standards, so that vector maps can be conveniently converted from one standard to another by the system.
A total of 15 678 genes were selected with high confidence based on RPKM values converted from mapped read counts by DEGseq (Supplementary Dataset S1).
Using the Kosambi map function [17], recombination fractions between adjacent informative marker loci were converted from the genetic map distances reported by the HapMap ENCODE project.
Hastily drawn maps converted the British colony into largely Hindu India and predominantly Muslim Pakistan.
Alignments were converted from sequence alignment map (SAM) format to sorted, indexed binary alignment map (BAM) files (SAMtools version 0.1.18; http://sourceforge.net).net
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