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Hsp60 was identified in spot F57 of the 2D map as described above.
The programs to extract the core dictionaries (Steps 4 7), to construct the semantic map (as described above), and to analyze the results, were custom implemented using a combination of GNU C (GCC 4.2) and Matlab along with their standard libraries and functions (all code is available upon request).
Predicted genes were anchored to the map as described above.
These spots are collected into one, so-called overexpression summary map as described in [ 6].
The drug perturbation-related gene sets were obtained from Connectivity Map as described previously.
For criteria viii, however, we used a skeleton map, as described in the Methods.
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WinQTL cartographer version 2.5 was used to perform QTL analysis using the composite interval mapping function as described previously.
Most smaller scale map series are prepared from large-scale maps as described above.
It is easy for an MS to verify the correctness of the decoded FCH and DL-MAP, as described in Section 2.1.
Photon attenuation was corrected for by CT-derived attenuation maps as described previously [12].
She had undergone training and learning DIE mapping as described by previous authors [3, 8, 9, 10, 11, 14] during 2010 2011.
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