Sentence examples for many uncalled genotypes from inspiring English sources

The KASP assays were largely successful for most samples, except for Fibermax 966 and Deltapine 90, which likely had a much lower DNA concentration when measured via nanodrop, so it was not reaching a genotyping end-point consistently with the other samples and thus led to many uncalled genotypes.

The second type consists of markers that had many samples with uncalled genotypes and therefore had a call frequency between 0.50 and 0.99, which may be caused by the presence of an additional null allele.

Uncalled genotypes are replaced with ambiguous nucleotides.

With GBS, several marker genotypes are missing and, even after imputation, uncalled genotypes are still present.

As is typical of GBS genotypes, all markers had a high incidence of uncalled genotypes.

However, existing methods are imperfect leading to incorrect calls and uncalled genotypes ("no-calls").

One sequencing center provided data with nearly twice as many uncalled bases and in the current implementation of Stacks reads containing uncalled bases are discarded.

Given that GBS data come with a large percentage of uncalled genotypes, we evaluated methods using nonimputed, imputed, and GBS-inferred haplotypes of different lengths (short or long).

For the final SNP (753848-0_614), the within-genotype variation was smaller and clusters were quite distinct, with few uncalled genotypes, but the mean values of p were very different from 0.0, 0.5, and 1.0.

We have conducted the first formal analysis of the effect of novel variants on genotyping arrays, and we have shown that these variants account for a large portion of miscalled and uncalled genotypes.

GBS data are highly dimensional and usually come with a large percentage of uncalled genotypes; therefore, incorporating this information into models poses important statistical and computational challenges that need to be addressed but have not yet been studied in detail.