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How many transcripts had homology to the fire ant and/or the honey bee?
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Our analysis of transcript 5' ends suggests that transcription initiation and transcript processing in Anabaena is often complex, and that many transcripts have long 5' UTRs with unclear transcriptional start sites or processing sites.
Many transcripts have multiple antisense transcripts in plant.
Many transcripts have correlated expression to only a small number of other transcripts (see Additional file 2: Figure S5).
Many transcripts have been found in intergenic regions, particularly the long intergenic noncoding RNAs (lincRNAs) (Derrien et al. 2012).
From the NAT-network, we found that many transcripts have more than one partners and are involved in several NAT pairs.
To date, many transcripts have been evaluated as 'tumor-specific' markers, such as CK18, CK19, CK20, Mucin-1 (MUC1), and carcinoembryonic antigen [ 35].
The presence of pleiotropic hotspots affecting the expression of many transcripts has already been described in yeast [ 14], where no more than 200 trans-eQTLs explained transcript variation for 1,716 traits.
This is a major problem as many transcripts have low-abundance, and there is currently a consensus that many of the corresponding genes are associated with critical regulatory roles in the cells [ 33].
Our study examined not only which and how many transcripts have alternate forms but also how differential ends vary under a large set of different conditions and how these differential ends affect gene expression.
Many transcripts have been assembled at close to full length, and there is a net gain of sequence data for over half of the pre-existing O. fasciatus accessions for developmental genes in GenBank.
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