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In the present study, many transcripts from both species were identified as having similarity to retroelements.
Nevertheless, we obtain nearly as many transcripts from the neo-Y as from the neo-X.
Co-transcriptional binding of Nrd1 Nab3 and Trf4 may be an important factor in the very rapid degradation that makes many transcripts from yeast and other eukaryotes 'cryptic'cryptic
The early up-regulation then disappears on day 3 and comes back to high levels for many transcripts from day 7 onwards.
The observed FSHD-related upregulation of many transcripts from oxidative phosphorylation genes could result in an increase in endogenous reactive oxygen species and might eventually result in apoptosis in some severely affected muscles.
Numit rps13 transcripts were present at or above the levels of rps10 in ovaries and roots, and most organs showed at least half as many transcripts from numit rps13 as rps10.
Similar(54)
We then counted, for each TSS in the list, how many transcripts starting from this TSS included the exon, and how many transcripts excluded the exon.
Our alternative approach to the estimation of genome size was based on the coverage of putative transcripts, with the assumption that many transcripts originate from single copy sequences [ 23].
It must be stressed though that Cufflinks is far from perfect and tends to generate many questionable transcripts as can be seen from the transcripts we removed (see Additional files 12 and 13) and the many transcripts assembled from library group 5 (see Additional file 8).
It is also important to note that many transcripts were identified from NR and DL limbs that code for retroelement components (Table 5; for example polyproteins, gag proteins, reverse transcriptases, and recombinases).
Many transcripts recovered in libraries from resistant trees were assigned to the cellular component subcategory and further classified into organelle subcategories of plastid, chloroplast, and mitochondrion.
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