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Together with the infinitely-many-sites model for mutations, the simplified multilocus haplotype model is used to approximate the evolutionary dynamics of the data.

As described in previous sections, the infinitely-many-sites model for mutations in conjunction with the simplified multi-locus haplotype model is assumed.

Under the assumption of the infinitely many-sites model, if a mutation event occurs, it can result only in one of the single-multiplicity haplotype groups at time v (n k = 1) and the mutation coordinate must be a singleton in the sample configuration at time v.

At any rate, mitochondrial DNA do not obey the assumptions of the infinitely many site mutational model (IMSM; [69]).

The scan took about one day to complete on 13 parallel processors, suggesting that a large-scale scan of many structures with many functional site models is actually quite efficient.

In this article we look at Kirkwood Buff integrals computed using thermodynamic averages derived from grand canonical ensemble molecular dynamics simulations and compare them to similar quantities derived from the dielectrically consistent reference interaction site model many-body theory.

Many pages don't use site model pictures.

In principle, SeqFEATURE can be applied to build models for other sequence-oriented motif databases, such as Pfam or PRINTS [ 36], to generate many more functional site models quickly and automatically, greatly increasing FEATURE's coverage of protein function space.

Mutations were simulated according to an infinitely-many sites mutation model.

The Poisson distribution for SNP density follows from the assumption of the infinitely-many-sites mutational model under selective neutrality, where mutations hit a site at most once according to the product of the total length of the site-specific coalescent tree and the site-specific relative mutation rate.

A panmictic, Wright-Fisher, neutral coalescent model with a constant effective population size of 10,000 diploid individuals was assumed to simulate the distribution of the number of segregating sites at a locus of 100 kb evolving under an infinitely-many-sites mutation model using the C program ms [ 8].

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