Sentence examples for many pathway databases from inspiring English sources

Many pathway databases are not directly exportable to CellDesigner models.

139 Although many pathway databases are available, high-resolution annotation of such knowledge bases is still lacking.

Currently, many pathway databases have been established maintaining this record for different species which we use to understand this process.

Because there are many pathway databases available, we examined if FBA can produce the same results by using different pathway data.

There are many pathway databases available in public domains, such as KEGG [ 17], BioCarta, Reactome [ 18], GenMAPP [ 19], PID [ 12], and others.

Though several pathways find out significantly perturbed genes [ 16– 18], unfortunately, knowledge of pathways remains incomplete, and many pathway databases contain overlap and unavailable data.

Our study opens a debate on validity of using many popular pathway databases to obtain transcriptional regulatory targets.

As a result, a large amount of molecular reactions data is still dispersed in many signaling pathway databases without proper annotation.

Moreover, data exploitation in biological research involves not only actual datasets but also previous knowledge (sometimes referred to as Biological Domain Data [ 29]) which is captured in knowledge databases such as Gene Ontology [ 36] or the many biological pathway databases such as KEGG [ 37], or Reactome [ 38].

To analyze the agreement of the pathways in different databases, we only look at the pathway names in different databases, and calculate how many pathways two databases have in common.

To obtain high-quality pathway databases, many important databases are built by manual curation.