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Many microarray chips contain probes that are annotated as 'non-protein coding', indicating that there might be some valuable expression data that we can also mine for information.
In many microarray chips DNA spots were printed in an order related to the gene order on the chromosomes.
Given that in many microarray chips DNA spots are printed in an order related to the gene order on the chromosomes, the systematic relationship between gene co-expression and chromosomal location raises the suspicion that part of the gene pair correlations are associated with inherent chip artifacts rather than true biological co-expression.
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In Affymetrix U133 microarray chips, many genes are represented by multiple probe sets.
This is partly due to the expensive costs involved with not only with the researcher (i.e. microarray chips), but also many of the logistics involved with collection, processing, and storage of the frozen material.
Papaya is a member of family Caricaceae within the Brassicales, the same order as the 'model plant' Arabidopsis thaliana, which has been the object of many microarray experiments based on commercially available oligo-chips.
RIP-chip violates important assumptions of many microarray analysis methods.
The microarray chips were scanned with GeneChip® scanner (Affymetrix).
Commercially available microarray chips for mouse genes (Agilent MouseGE 4 × 44 K, Agilent Technologies) were used.
In biology, high throughput gene expression data obtained from microarray chips forms a matrix [13].
Virus detection and genotyping were assessed using the FDA_EVIR microarray chips described in previous study (Chen et al. 2011).
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