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Many intergenic regions in Zygnema cpDNA harbor tandem repeats.
Multiple, additional local minima - nucleosome-free regions were also observed in many intergenic regions.
Since previous releases of the annotation lacked the comprehensive annotation of transposon-homologous regions, many intergenic regions were found to harbor gene predictions that matched transposon ORFs.
Comparison of each zygnematalean cpDNA sequence against itself using PipMaker [ 24] indicated the presence of repeats in many intergenic regions of Zygnema cpDNA and the virtual absence of such sequences from Staurastrum cpDNA.
However, many intergenic regions were found to be conserved between T. rubrum and T. mentagrophytes, consistent with the close evolutionary relationship of these 2 species as revealed by phylogenetic analysis (Fig. 4).
Long PCR covering many intergenic regions demonstrated that the substantial reduction of non-coding DNA is shared across subgenus Grammica, with all species in the subgenus seemingly converging on a minimal length.
Similar(47)
The authors note that many intergenic enhancer regions are marked by H3K9me2 in the epiblast, and they follow up upon these observations using the in vitro cellular models.
Given the parsimonious nature of the vertebrate mitogenome, the presence of so many long intergenic regions is surprising.
Many C. elegans intergenic regions have long inverted repeat sequences, but in the following we focus on a few examples with clear orthologous regions in C. briggsae and C. remanei.
If they are functional, then it would imply that many of the intergenic regions of the D. salina plastid genome are transcribed.
There are many more short intergenic regions than the long ones, which typically leads to the pattern described by the authors.
More suggestions(15)
many intergenic transgenes
many intergenic TARs
many intergenic sequences
many lowland regions
many intergenic promoters[30] [33]
many other regions
many intergenic CGIs
many noncoding regions
many intergenic sites
many intergenic repeats
many intergenic CSSs
many agricultural regions
many many regions
many intergenic spacers
many small regions
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