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With the many genome sequencing projects rapidly producing vertebrate genomic data, comparative genomic approaches are becoming increasingly powerful.
The development of many genome sequencing projects extending beyond domesticated animals provides an opportunity to begin such inquiries.
Many genome sequencing projects for important crops, such as maize [ 3, 4], wheat [ 5] and rice [ 6, 7], have recently been completed.
Because of the rapidly increasing number of reference genomes becoming available for most organism groups, this reference-assisted assembly approach will soon become the default option for many genome sequencing projects.
As many genome sequencing projects continuously update the genome assembly, and high-throughput sequencing/microarray technologies frequently introduce millions of oligonucleotides, algorithm for fast mapping of oligonucleotides to the newest genome is needed.
Many genome sequencing projects use a range of in silico prediction methods to generate a large, and sometimes highly redundant, set of possible open reading frames (ORFs) and gene structure models.
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To understand human variation, especially with regard to inherited disease, it is necessary to accumulate not just one but many genome sequences.
With the availability of many genome sequences, SNARE proteins were also identified from various filamentous fungi.
With the availability of many genome sequences, SNARE proteins were also identified from various filamentous fungi [11].
With the recent development of high-throughput sequencing methods, many genome sequences have become available, making possible comparative studies of TE dynamics at an unprecedented scale.
The availability of many genome sequences from related yeast species allows us to conduct the evolutionary analysis of the entire pathway in these species.
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