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Many genes specifically or commonly expressed in the high milling yield cultivar Cypress and the good eating quality cultivar Ilpumbyeo were identified from the MPSS and SBS libraries.
Although many genes specifically activated during fungal colonization have been identified, genome-wide information on the exact place and time point of their activation remains limited.
Although many genes specifically expressed in response to stress were detected in both control and stressed plants, it is important to emphasize that these results represent gene expression data derived from RPKM values.
To our surprise, many genes specifically encoding proteins required for proper chromosome organization, assembly, function, repair, and progression through the cell cycle were downregulated to different extents in blm10 Δ/ blm10 Δ cells.
It has been shown that many genes specifically expressed in pluripotent embryonic cells are transcribed from similar upstream LTR promoters (Macfarlan et al. 2012; Fort et al. 2014), and this has been proposed to result in the concerted expression of genes important for pluripotency.
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The goal was to test how many genes were specifically expressed in each tissue (up- or down-regulated with respect to the other three) and how many genes would be co-expressed in 1) sepals and petals (the traditional A domain), 2) petals and stamens (the traditional B domain) and 3) stamens and carpels (the traditional C domain).
Many genes that specifically regulate flowering time have been identified in Arabidopsis thaliana.
Many genes were specifically downregulated in co-cultured compared with monocultured PHBECs (see Additional files 5F and 8, far right).
Our data revealed significant differences in gene expression between protoperithecia and non-reproductive mycelia, and showed that the transcription factor PRO1 is involved in the regulation of many genes expressed specifically in sexual structures.
The pollen transcriptome has been shown to be distinctive from the transcriptome in other structures, with many genes expressed specifically in pollen (Becker et al. 2003; Honys and Twell 2003).
After a cell is fully differentiated, many genes are specifically silenced by polycomb proteins and lncRNA-mediated histone methylation rather than by a large army of negative transcriptional factors [ 7].
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