Additionally, many genes encoding transcription factors, cytochrome P450s, glycosyltransferases, methyltransferases and transporters were shown to respond to MeJA elicitation.
Many genes encoding transcription factors (TFs) were also differentially regulated between the two genotypes in response to salt.
Metabolism (carbohydrate): many genes encoding sucrose metabolism-related proteins showed specific response in root and shoot during –P and ++P stress.
Many genes encoding glutaredoxin responded to the abiotic stresses but not to the SiAF, SiNF, or biotic stresses (Additional file 3: Table S2).
Antioxidant response element (ARE) is a unique cis-acting regulatory sequence located in the upstream regions of many genes encoding anticarcinogenic/antioxidant proteins.
The SiAF treatment induced many genes encoding glutathione S-transferase (GST) and thioredoxin (TRX) (Figure 2), although a few genes encoding other ROS scavengers were also changed by fog treatment (Figure 2).
Whereas C. thermocellum has a smaller number of such genes, C. cellulovorans has many genes encoding metabolic enzyme associated with interconversions between pentose and glucuronate, and metabolism of fructose, mannose, and galactose.
Group A was upregulated only at 3 h (Figure 1) and includes many genes encoding stress-related proteins such as pathogenesis-related proteins and heat shock proteins (data not shown).
Many genes encoding auxin-related regulatory proteins, cell wall-related proteins and cytoskeleton proteins were downregulated from the early to late stage without any morphological changes for the first 10 days during ++P stress.
In addition many genes encoding unknown proteins were induced in L2502-6 (Figure S1, Table S1).
Several of the resulting clusters contained genes encoding proteins with similar annotated functions, along with many genes encoding hypothetical proteins.
