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Because many genes encode multiple protein isoforms, not all coding-intron insertions are equally useful.
According to the previous analysis, we can also speculate that many genes encode some preceding metabolic enzymes in dry seeds.
Considering the myriad cellular processes that keep our body functioning, a clear and reinforcing realization is that many genes encode more than one protein, a theory replacing the old notion of one gene one protein.
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Additionally, many genes encoding transcription factors, cytochrome P450s, glycosyltransferases, methyltransferases and transporters were shown to respond to MeJA elicitation.
Many genes encoding transcription factors (TFs) were also differentially regulated between the two genotypes in response to salt.
Metabolism (carbohydrate): many genes encoding sucrose metabolism-related proteins showed specific response in root and shoot during –P and ++P stress.
Many genes encoding glutaredoxin responded to the abiotic stresses but not to the SiAF, SiNF, or biotic stresses (Additional file 3: Table S2).
Antioxidant response element (ARE) is a unique cis-acting regulatory sequence located in the upstream regions of many genes encoding anticarcinogenic/antioxidant proteins.
Over the last decade, many genes encoding the primary VLC-PUFAs biosynthetic activities became available providing a toolkit for the "reverse-engineering" of transgenic plants to produce fish oils.
The SiAF treatment induced many genes encoding glutathione S-transferase (GST) and thioredoxin (TRX) (Figure 2), although a few genes encoding other ROS scavengers were also changed by fog treatment (Figure 2).
Whereas C. thermocellum has a smaller number of such genes, C. cellulovorans has many genes encoding metabolic enzyme associated with interconversions between pentose and glucuronate, and metabolism of fructose, mannose, and galactose.
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