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axr and gatabp1 have too few polymorphisms in loblolly pine and too many fixed differences.
Some loci show many fixed differences and few local polymorphisms; others show the opposite.
Despite evidence that clades A and B represent alleles at the same locus, and direct evidence of recombination at this locus, clades A and B retain many fixed differences and little shared polymorphism (Table 3).
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The large effective population sizes are also possibly the reason why there are many shared polymorphisms and few fixed differences, despite the limited gene flow.
This provides many SNPs/indels for further study (Supplementary Sheet 2), although given our limited sampling of individuals within populations (n = 2) many will not be true fixed differences (i.e. they are false positives, other individuals contain these variants).
pcna has too many polymorphisms in loblolly pine, and sams2 and set-like-c have too many polymorphisms in Scots pine; all three loci also appear to have too few fixed differences between the species.
Inversions are remarkably abundant in the genus Drosophila, both as intraspecific polymorphisms and as interspecific fixed differences [5], [6] and increasing evidence point to their prevalence in many other species, e.g. humans [7] [11].
Pericentromeric regions rich in satellite DNA show fixed differences between incipient species of mosquito Anopheles gambiae in contrast with other regions of genome where many polymorphisms are shared, and are proposed to act as speciation islands (White et al. 2010).
In addition to indels being clustered with single nucleotide polymorphisms and fixed differences, we also show that transversion mutations are enriched in sequences that flank indels and that many indels associate with sequence repeats.
The operator has infinitely many fixed points.
In this case, T have infinitely many fixed points.
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