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However, in many empirical datasets, pooled samples have a lower Tajima's D than local samples (e.g. Ptak and Przeworski 2002).
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This formula is as equally good as CIEDE2000 in the prediction of many available empirical datasets, but with higher simplicity [21].
Multi-locus empirical datasets have many more sources of variation that would elevate the number of loci needed to estimate θ accurately.
Our results suggest that error remains in branch length estimation, both dependent on and independent of substitution model parameter misestimation, given dataset sizes comparable to many empirical studies.
Our coupled oceanographic-genetic model predicts many of the patterns observed in this and other empirical datasets; such patterns include the isolation of the Bahamas and an east-west divergence near Puerto Rico [3, 21 23].
Many empirical models simulate gene flow well, although their utility is often restricted by datasets with limited environmental variability or spatial scale.
In the past, many empirical models of amino acid substitution have been derived using a variety of different methods and protein datasets.
In the present study, our first goal is to explore the impact of sampling on demographic inferences within two empirical datasets with divergent population structure and history and with a number of loci in the same range as many sequence studies on natural populations of nonmodel organisms (13 16 loci).
So many empirical studies have selected unit of analysis using cumulative results from prior empirical studies.
The developed framework was validated using empirical datasets collected from a series of experiments.
Figure 4 The rank-based analyses of randomized versions of the empirical datasets.
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