Sentence examples for many contigs that from inspiring English sources

The Gu et al physical map contained many contigs that could potentially be joined, suggesting that the use of longer clones, half of which represent different genome samples, may have contributed to the greater contiguity reported in this study.

At the end of step 3 of the assembly pipeline, the total contig set was comprised of many contigs that were not affected by the clustering process, some contigs that were the product of one or two contigs having been concatenated with pre-existing EST sequence, some contigs that were joined during the An.

Metagenomic assembly provided many contigs that clearly belonged to gamma-proteobacterial cells that gave consistent hits to the genomes of both Nitrococcus mobilis Nb-231 and Alkalilimnicola ehrlichii MLHE-1.

Thus an assembler that produced a large assembly that included many contigs that were redundant could be worse that an assembly that was shorter but only included unique bases.

The large number of contigs between 100 and 200 bp in length can be assumed to consist of both real short transcripts (that are difficult to annotate by blastx searches since they are so short) and many contigs that represent non-overlapping fragments of single genes - greatly inflating gene counts.

In addition to cellulases, our study also uncovered proteins associated with the cellulosome in rumen fungi, such as contig8798, which is annotated as a cellulosome enzyme dockerin type I protein, as well as many contigs that were predicted to contain the CBM10 domain (pfam02013).

SPAdes sometimes generated many small contigs that did not align to the reference genome.

During the assembly process, a very low proportion of the reads was assigned to a few contaminating contigs of eukaryotic origin; additionally, in one of the assemblies (namely 20 2), it was possible to discern a related Lactobacillus sequence at a very low coverage, which gave rise to many short contigs that were removed from the final assembly.

Furthermore, solutions to MIP problems of such large partitions often place many contigs so that they overlap with other contigs even if the overlapping sequences are not similar.

Many of the viral contigs that matched transcriptome reads had no or only a single identifiable homologue to other known phages.

BAC-contig edges that are located next to each other in medaka were subsequently visualized by arcs, in many cases confirming a connection between contigs that was also found before by non-consistent matching sea bass BAC-ES.