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Blueprint provided me with training on many bioinformatics tools, in-house and Web-based, as well as training in the curation process.
Many bioinformatics tools have been developed for this purpose.
Many bioinformatics tools use reference data, such as genome assemblies or sequence databanks.
Many bioinformatics tools have been developed to derive splicing patterns from RNA-seq data.
However, many bioinformatics tools do not scale accordingly, are cumbersome, or require extensive support from bioinformatics experts.
There are many bioinformatics tools available to predict miRNA targets; however, consistency among different platforms is limited [ 86].
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Many bioinformatic tools are able to predict miRNA target genes (Table 1).
Gentrepid is one of the many bioinformatic tools developed to help geneticists predict and prioritize candidate genes [ 9, 15].
Many bioinformatic tools are either free and open source or freely available for academic use, and are thus natural choices.
This reference was used to facilitate short-read mapping and read-depth analysis, using a workflow analogous to studies in diploid mammals, for which many bioinformatic tools have been developed [ 22].
However, many bioinformatic tools exist for characterizing data from next-generation sequencing (NGS) runs, including identifying regions through BLAST searches, mapping the reads to a reference genome using BLAT, as well as de novo approaches such as gene prediction (Altschul et al., 1990; Kent, 2002; Stanke and Waack, 2003; Korf, 2004).
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many bioinformatics areas
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