Sentence examples for many alignment regions from inspiring English sources

Using the pairwise data, start and end positions of the modules were estimated from the many alignment regions and were set to cover as much of the sequence as possible, not only the most conserved regions of all the alignments.

Many alignment algorithms exist.

Many alignment formats were supported, and feature annotation extracted from SwissProt (Boeckmann et al., 2003) flat-files could be plotted on the alignment to highlight important regions of a sequence.

There are many alignment formats available.

The detected unreliable alignment regions were discarded.

Many alignment methods often produce reasonable alignments which score worse than alignments with alternative templates.

For overlapping alignment regions, we formed single contiguous regions.

Especially in scenarios where some of the input genomes have undergone whole-genome duplication, the positional homology alignment method may fail to align many target regions.

Specifically, while the d N / d S test uses only a few parameters to model the rates of all possible codon substitutions (Yang and Nielsen, 1998), PhyloCSF uses empirical codon models (ECMs) based on several thousand parameters modeling these rates (Kosiol et al., 2007)—one ECM estimated from alignments of many known coding regions and another ECM from non-coding regions.

Poorly aligned regions of the multiple protein alignment of EGFRs were removed with Gblocks49 using the least stringent parameters.

Sequence alignment of YpfI showed that these proteins shared many conserved regions.