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Magnetically aligned bicelles represent one of the many alignment media used in the study of RDCs.
There are many alignment methods available that differ in the amount of a priori information (including structural) they employ, computational complexity, etc.: MUSCLE [35], MAFFT [36], HMMER [42], and T-Coffee [43] are four we have investigated.
Many alignment algorithms exist.
There are many alignment formats available.
Second, genome rearrangements disrupt the synteny implicit in many alignment procedures.
Many alignment methods often produce reasonable alignments which score worse than alignments with alternative templates.
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We assessed the impact of this phenomenon on our analyzes by calculating how many alignments might end prematurely because of a contig boundary (Table 3).
Many alignments did not involve active site residues or residues playing other structural and functional roles.
For a sequence to be classified as Y-linked with the chromosome quotient it must have many alignments from males, and zero or a few alignments from females.
The advantages of using many alignments as input to OQC becomes more apparent in our test of SV breakpoint detection in the next section.
For BWT-SW, end users usually need to post-process the results to filter out many alignments of little interest to them.
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