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Nearly all of the graphs in the manuscript were calculated and generated in Scilab.
The 95% CI for the percentage susceptible presented in this manuscript were calculated using the SAS exact method for binomial confidence intervals.
The R-values presented in the original manuscript were calculated using an automated tracking assay for kinetochores (GFP-CENP-A) and centrosomes (GFP-centrin1) recorded with a 7.5 seconds resolution.
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The frequency of mutations reported in this manuscript was calculated for each sample with this formula: Total number of detected mutations/(base pair length of the amplified fragments × number of sequenced clones) × 1000, considering that all analyzed samples were produced with the same number of PCR amplification cycles.
Relative luminescence units were calculated.
were calculated from the models.
We also plan to integrate a predictor-independent strategy [e.g. alignment- and clustering-based approach similar to GibbsCluster and NNalign (Andreatta et al. 2013; Nielson et al. 2009)] since the HLA annotation score used in this manuscript can only be calculated for well-characterized HLA alleles.
Where 95%CI were not calculated in the original manuscripts, these have been calculated using the Wald method.
In the primary manuscript [ 2], gel adherence was calculated as the estimated proportion of reported sex acts covered by two doses, calculated for each woman by dividing half the number of returned empty applicators by the number of reported sex acts that month.
An unadjusted OR was calculated for manuscripts reporting rates of mortality, study sample size, and prevalence of diabetes.
Throughout the manuscript, transition rate (transitions per bp) was calculated by totaling the number of cryptic initiations that are calculated at defined cutoffs for a particular class of genes and then dividing this number by the total length of genes analyzed within that class.
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