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Surfaces of the mouse aorta and aneurysm were manually segmented from the 3-D micro-US and histology images.
The C5 vertebral body was manually segmented from the CT dataset and the resulting surface loaded into the software to simulate the surgical procedure.
To measure uptake (counts) for volumes of interest (VOIs), VOIs from each image were manually segmented from co-registered CT images by using VIVID and PMOD software (PMOD Technologies, Zurich, Switzerland).
In short, the humerus and ulna were manually segmented from a high-dose scan at 0° flexion, and subsequently aligned, by 3D image registration, with low-dose CT images containing the elbow in subsequent states of flexion.
These were manually segmented from the averaged structural MRI scan of the 25 participants.
If no T2-weighted image was available, an intracranial mask was manually segmented from the T1-weighted image.
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The following nine structures were manually segmented, proceeding from inferior to superior axial T2w slices: brain stem, cerebellum, amygdalae, hippocampi, corpus callosum, accumbens, caudate, thalamus, and lenticular nuclei.
Unlike flow cytometry the two micrograph-based techniques, quantification from manually segmented DAPI images and quantification from color-deconvolved images, can quantify kinetoplast and nuclear DNA separately.
Eleven individual B-scans from each cube scan were manually segmented by an experienced segmenter with the use of a computer-aided manual segmentation procedure [ 12].
The choroidal automatic segmentation algorithm has been thoroughly tested and evaluated against a large, manually segmented data set obtained from a 1060nm OCT system and proved highly robust in wide-field scans even in the presence of artifacts and pathologies.
The agent uses some images and their ground-truth (manually segmented) version to learn from.
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