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In order to take sample distances in this manner, these points had to be manually referenced in iWitness on three or more photos for sufficient accuracy.
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We downloaded raw data for the microarray samples referenced in the manually curated CellNet tissue atlas (Cahan et al. 2014) and combined them with data from test systems UKN1 and UKK (Balmer et al. 2014; Krug et al. 2013; Waldmann et al. 2014).
Data were referenced in the ProteOn manager software and inspected manually.
In these studies, two additional studies were identified by manually searching the references in the manuscripts.
Additional references were retrieved by clicking on the 'related articles' hyperlinks in Medline and by manually searching reference lists in original published articles, review articles and correspondence.
We also manually searched reference lists in each article to identify additional studies.
We manually reviewed reference lists in all retrieved articles for related publications.
After systematically searching literature databases and manually searching references lists in relevant reviews and studies, we included 20 studies examining the diagnostic accuracy of cholesterol levels in patients with pleural exudates [ 16- 35].
For the first experiments (whole season), all samples were hybridized manually against the common reference in four replicates without dye-swap using the POP1 slides described by [ 12].
The dataset has been anonymized by replacing the names by sequential string ids (Patient1, Patient2, and so on), the dates by a relative count of seconds from the first timestamp, and also by manually removing all personal references in the text of the EHRs.
Some PPIs were curated manually, and references are listed in Supplementary Table 5.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com