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Proteins were manually grouped into 25 metabolic pathway categories.
These selected terms were then manually grouped into appropriate classes for simplicity of presentation.
The event labels used in the annotations were manually grouped into 61 distinct event classes.
Cross peaks were assigned manually, grouped into four categories according to their relative peak intensities which correspond to interproton distance restraint limits of 1.8 2.5 Å (strong), 1.8 3.0 Å (medium), 1.8 3.5 Å (weak) and 1.8 5.0 Å (very weak).
The selected verbs were then manually grouped into different clusters.
To reveal the processes buffered by GLC7, 163 of 245 genes interacting with the glc7-E101Q mutant were manually grouped into 12 functional categories (Table 2).
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In a second phase, we manually grouped genes into lists A, B, C and D following the same strategy explained above.
We also looked at the top 100 most expressed genes in gametes and manually grouped them into functional categories based on gene annotation information (Additional file 1: Table S2).
In order to smooth out the values in Figure 10 as much as possible, we manually grouped individual separations into bins.
In the first analysis, these preferentially expressed genes were manually grouped based how they mapped into the Kyoto Encyclopedia of Genes and Genomes (KEGG) biological pathway [ 49].
In each assembly, reads were manually grouped according to DNP content and mate pair data into repeat groups that were subjected to further analysis and comparison.
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