Smaller families with five or more members sharing the same domain were manually examined using GExplore [ 54] and grouped according to their predicted domain function.
Cross peaks were assigned manually, grouped into four categories according to their relative peak intensities which correspond to interproton distance restraint limits of 1.8 2.5 Å (strong), 1.8 3.0 Å (medium), 1.8 3.5 Å (weak) and 1.8 5.0 Å (very weak).
Putative functions were assigned to the predicted mtProt using GO and were manually grouped into 12 categories according to biological process.
Proteins were manually grouped into 25 metabolic pathway categories.
The selected verbs were then manually grouped into different clusters.
Subsequently meaning units in the text were identified and manually sorted into groups according to the topics from the main questions in the focus groups, i.e. the three key priority-setting criteria.
Clusters encoding proteins of known function were categorized manually into broad functional groups according to the FunCat annotation scheme.
Coding was done manually by grouping them according to categories which were then grouped into subcategories.
Firstly, we manually divide all the 147 symptoms into 27 groups according to the categories of symptoms (Table SS in Supplementary Material available online at http://dx.doi.org/10.1155/2014/127572).org/10.1155/2014/127572
In apple, because of a genome-wide duplication55, the first step in creating the linkage map was to assign groups manually according to the physical position of the markers56.
