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Each SNP was manually evaluated for overlap with annotated or projected features.
In other words, the abstract-level precision was manually evaluated for each event class.
Gene Ontology terms were assigned and the ESTs were manually evaluated for specific categories, including transcription factors and photosynthetic genes.
Sequence traces were downloaded, imported into Contig Express model of the VectorNTI Advance 11 software (Invitrogen, Carlsbad, CA, USA), assembled and manually evaluated for polymorphisms.
Novel candidates were manually evaluated for precursor secondary structures, using the plant version of the UEA sRNA hairpin folding and annotation tool, with default settings [ 43].
The accuracy of the genotype call was manually evaluated for the misclassification of homozygous and heterozygous clusters using the software's clustering algorithm.
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First, the 'new' diagnoses in the four problem areas were extracted automatically and, second, they were manually evaluated either for the use of synonyms and more specific terms or for the introduction of completely new diagnoses.
nf1aΔ8/+; nf1b+10/+10; p53e7/e7 fish were incrossed and progeny were manually evaluated weekly for 45 weeks.
As described below, these predictions were manually evaluated separately for the chromosomes and pRF plasmids, improving the total numbers of predicted ORFs across all three genomes.
In order to assess our annotation performance, we manually evaluated the annotation results for 10 randomly selected drugs and diseases that covered all sources of phenotypic information.
Potential conflicts between the three sources were manually evaluated and subsequently solved, for example, via literature research, as in the case of PlnTFDB C2C2-GATA (tify; could) versus PlantTFDB (tify; should not).
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manually assessed for
manually validated for
manually analyzed for
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manually trimmed for
manually examined for
manually labeled for
manually counted for
manually annotated for
manually solved for
manually edited for
manually inspected for
manually picked for
manually analysed for
manually scanned for
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