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In particular, computed FTs were manually evaluated by MS experts.
Then, the traveltime residual between the maximum and true peaks in the master waveform is manually evaluated.
He has evaluated experimental result with the manually evaluated values as reference values, which was only 2%.
Phosphopeptides were manually evaluated.
To understand the reason of this difference, each of incongruent genes were manually evaluated.
Genes consisting of fewer than 33 aa were eliminated, and those containing overlaps were manually evaluated.
Predicted coding sequences (CDSs) were additionally manually evaluated using JGI's Quality Assurance pipeline (http://genomebiology.jgi-psf.org/Content/QApipeline.htm).htm
Predicted gene structures were manually evaluated by alignment with rice EST and full-length cDNA (FLcDNA) public sequences [52].
The 5000 most frequently occurring verbs-candidates were manually evaluated to detect words wrongly classified as verbs.
Genotypes were analyzed using the GeneMapper software (v. 3.7, Applied Biosystems) [79] and all genotypes were manually evaluated by 2 independent observers.
We only considered peptides with double and multiple charges, and manually evaluated the expression values by inspecting the areas of integration that the software had chosen and by adjusting them as needed.
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