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With the action word set, transcription factor, and gene names identification, we then manually establish several patterns that can describe the transcription factor and target gene regulation relationship from the answer sets to be our seed patterns.
This information was also used to manually establish chromosome position, exon-intron junctions and intron phase for each PtMPK and PtMKK gene family member.
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These patterns are manually established.
To more extensively evaluate this method and perform larger scale experiments in the following context than supported by the current literature-derived data, Dataset M was manually established utilizing the Protein Quaternary Structure database [40].
Thus, taken together, despite the encouraging finding that fully automated programs can reconstruct manually established gene families with good quality in principle, the question remained how these programs should be parameterized in practice.
First, a list of the 16 conserved genes encoded in T6SS gene clusters demonstrated to be functional in virulence have been manually established (Table 1 and Figure 1).
Initial outcome, level of competence of the caretaker and diagnosis of each patient were manually established in each case in a combined audit of the prehospital database, the discharge summary of the MECU and the medical records from the hospital.
Genes with high sequence similarities to a gene in another strain but differing significantly in length were inspected manually to establish the cause of variation.
Acting this manually may establish to be much risky particularly for extensive accounts.
The chamber videos were preprocessed, tracked, postprocessed and manually annotated to establish a ground truth.
Sequence polymorphisms were manually verified to establish genotypes.
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