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For phylogenetic reconstructions, some alignments were manually edited during which unaligned regions (inserts) were removed.
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Sequences for each marker were compiled into contigs and manually edited using SeqManPro version 8.0.2.
▪ Ability to be human read/parsed and manually edited.
While the surface reconstructions were visually inspected, the surfaces were not manually edited, for two reasons.
Throughout the process, images were visually inspected, and any inaccuracies were manually edited.
The multiple sequence alignments were manually edited.
We then manually edited the slices.
Sequence alignments were created using MUSCLE [23] and manually edited.
All alignments were inspected by eye and manually edited.
Each sequence was manually edited in conjunction with its chromatogram.
Each of the masks was manually edited for any miscoverage.
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