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We calculated three entropy values for each position based on the Pfam [36] "seed" and "full" alignments, and on a profile-based multiple alignment manually derived from the sequences present in our non-redundant set of peptide-mediated interactions of known structure.
Owing to the increasing evidence of the primary role of microRNA (miRNA) deregulation in the onset of human cancer (10, 11), NCG 4.0 also annotates the systems-level properties of 64 cancer-related miRNAs (oncomiRs) manually derived from the literature.
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Concentrations of DHA that produced 50% inhibition in cell survival (IC50) following a 24 h exposure, were manually derived from dose response curves generated by the Microsoft Excel 2010 edition.
Such rules, manually derived from experience, are verified by means of the inspection personnel that is in charge of checking the status of the affected network elements, either remotely or on-site.
GO-terms in italics were manually derived from database entries linked from NetAffx using the assistance of a data mining method [64].
When the gene location cytoband was not available in the Gene database [ 35], it was manually derived from UCSC Genome Browser [ 36].
In this study, we created a workflow to evaluate cloud and cloud shadow masking algorithms using cloud validation masks manually derived from both Landsat 7 Enhanced Thematic Mapper Plus (ETM +) and Landsat 8 OLI/TIRS data.
Throughout this work, we will use a small example network of epidermal growth factor (EGF) and neuregulin-1 (NRG1; also known as heregulin) signaling that was manually derived from a large-scale network describing signaling through ErbB receptors [ 20].
Manually derived entries from the previous Homeodomain Resource release were automatically compared and updated, while new automated entries were manually verified.
This resource includes manually curated information derived from the literature, as well as high-throughput analyses for 1,232 phosphorylation sites in 287 human kinases present in our dataset.
Interviews were audio-recorded, transcribed verbatim, and coded manually using codes derived from the original research objectives and from additional emergent themes, ensuring mutually-exclusive and exhaustive coding categories.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com