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For that end, the target sequences were aligned with known Lcc cDNA (e.g., Neurospora crassa AAA33591 or Trametes versicolor U44431) and were manually corrected with BIOEDIT 7 (Hall, 1999) and ClustalW (Thompson et al. 1997).
To optimize segmentation, binary frames were sometimes manually corrected with appropriate tools built into the software.
Sequence alignments were edited and manually corrected with GeneDoc software [ 72].
Amino acid sequences of Wtx/Amer1, Amer2, Amer3 were aligned using Clustal W [ 14] and manually corrected with BioEdit [ 14, 15].
The retrieved sequences were aligned using the muscle 3.6 program [ 89] and the resulting alignment was manually corrected with SEAVIEW [ 90].
The alignments from the amplicon libraries were checked and manually corrected with G eneious P ro before further analysis with M othur.
Similar(53)
In a few cases the gene models retrieved were incomplete, when possible these incorrect gene models were manually corrected (marked with "b" in Table 2).
Alignments were manually corrected when necessary with GeneDoc 2.6 [ 40].
Sequences were manually corrected and assembled with the software Sequencher 4.4.2 (Gene Codes).
System 3 (oracle): feature vectors augmented with manually corrected section headings.
These sequences were aligned using MAFFT v6.864b [ 85] and the alignments were manually corrected editing the sequences with GeneDoc 2.7 [ 86].
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