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The chemical structures contained within these images were manually converted to SMILES strings, chiefly by redrawing the structure using ChemDraw 12.0 and exporting the structure as SMILES or by manual conversion in the case of simple structures, which were recorded in an index of the corpus.
Corresponding structure-based sequence alignment was exported into a text file, manually converted to the FASTA format and imported into BioEdit [ 101].
In order to perform a comparison between the dataset and the guideline, the textual guideline was manually converted to computer-processable format.
In order to process a comparison between the dataset and the guideline, the textual guideline was manually converted to computer-processable format.
Trees for illustrations were exported in a NEXUS format, manually converted to Newick trees, visualized and annotated using Dendroscope V 2.2.2.
Questionnaires returned by post were manually converted to a Word document, double checked and processed in the same was as the digitally returned questionnaires by the first author (EMH).
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MIRU-VNTR allele number was manually converted according to amplicon size.
The hit scores were manually corrected and converted to individual BAC clone addresses using the BACEater software (http://bacman.sourceforge.net/program/BACEater.html).html
For creating the feature database, the 1299 snake images are manually converted by taxonomist to form feature vectors representing 38 taxonomically relevant features.
The resulting alignment was manually examined (AlnEdit) and converted to aligned FASTA-format (input to HMMaccel for the next iteration).
First the corpus of manually curated disease mentions was converted to the BioC format.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com