We have developed a centralized database consisting of manually compiled 16,231 datasets, with 614,161 screen hits, binary interactions and other functional information (Supplementary Table 1).
Despite this fact, we manually compiled a module with the IFN-responsive genes detailed by Rubins et al [ 1] (in Figure 2A).
CMAP and force features were quantified using custom MATLAB scripts, which were validated through comparisons with manually compiled data.
The ListeriaBase homepage features a brief description of the genus Listeria in the main panel along with manually compiled information that are related to Listeria such as news & conferences, blogs & other information and the most recent published papers in the side panel.
It's based on this manually compiled database of expert, along with user reviews, that Carbuzz is able to offer its main feature called the 'Car Chooser', which allows users to input details of what they want from a car, such as the number of seats and running costs, after which they are presented with a list of the best available matches.
All Python tools have been tested with a manually compiled version of Python 2.7.3.
The gene network co-expression patterns were compared with a manually compiled protein-protein interactions (PPI) database retrieved from the Human Protein Reference Database HPRDD) [ 32, 33].
We manually compiled a list of 341 Pasteurellaceae virulence proteins (with some functional redundancy), including and expanding on those compiled by Challacombe and Inzana [ 54].
We also compared predicted TF dimers with a list of 29 known TF dimers manually compiled from the existing biochemical literature.
A number of experimentally verified anti-mycobacterial phytomolecules along with their experimental assay preparation and bioactivity details have been manually compiled from literature.
