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Representative coordinates are manually chosen from all the occurrences of the ligand in PDB files.
For method development, a panel dataset of 20 images was manually chosen from a dataset of hundreds of water quality images acquired by users.
Four motifs, centered on the two different classes of atomic columns, were manually chosen from the cluster label map, demarcated by the black squares in Fig. 5b and also shown in Fig. 5c. Figure 5d shows the overlay of the normalized matching scores for each of the four motifs and the atoms identified by different motifs are differentiated by color.
A random clade was manually chosen from the tree, as long as it met the following criteria: (1) 3–8 self species that formed a clear monophyletic group; (2) 10–20 close species that were closely related to the self clade; (3) the self and close species together formed a clear monophyletic group that was independent from all other species (the distal group).
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Initially, users had to manually choose from Watchup's videos, but in a recent update the company added the ability to automatically assemble a playlist based on your preferences, and to schedule a daily newscast.
You can also manually choose from a list).
Unrelated Microviridae Rep sequences were manually chosen for comparison.
Beta values for these probes were generated by sampling from one of two manually chosen beta distributions, each empirically matching the two main modes in typical 450K arrays derived from leukocyte samples.
To avoid tree artefacts resulting from root positioning, the pist_igi19985888 protein was manually chosen as root for the phylogenetic tree (cluster A) since this protein does not cluster together with any of the other amino acid sequences.
The threshold values for each pattern are manually chosen such that the number of matched areas is maximized while minimizing any overlap with segments from other patterns.
From this set, 48 barcodes that had an equilibrated base composition at the first two bases (for better cluster calling) were manually chosen.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com