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Protein frames for enzymes and transporters, but not the compound frames for metabolites, can be manually associated with the Cellular Component Gene Ontology terms (http://www.geneontology.org) that are related to the SRI Cell Component Ontology.
For evaluation purposes, we designed a so-called GOA benchmark of 1000 MEDLINE abstracts sampled from the curated section of the GOA database, and our two local GO classifiers were evaluated on their ability to extract the GO terms that were manually associated with these abstracts in the curated subset of GOA.
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Multiple contact-linking and photo-sharing methods are covered in the patent, including letting users manually associate contact info with faces, and post to social networks as another way to distribute photos.
The list downloaded from GeneSigDB contained manually curated genes associated with lung cancer OS (Core algorithm in Additional file 1).
3 12 Data quality evaluation involved manually checking data associated with each case for completeness and internal consistency.
In addition to manually curating data associated with virulence, we have computationally integrated data from two VF resources, allowing researches to see the homologs of all genes identified as virulent across the 22 000 genomes currently in PATRIC.
Figure 3 shows signal-to-noise ratios associated with manually set machining.
The former refers to a user's explicit action of manually entering appropriate keywords associated with the content, whereas in the latter approach, users do not necessarily input tags.
The problems associated with manually operated denitrification systems have been incomplete denitrification (oxidation reduction potential, ORP>−200 mV) with the production of nitrite (NO2−), nitric oxide (NO) and nitrous oxide (N2O) or over-reduction (ORP<−400 mV), resulting in the production of hydrogen sulfide (H2S).
Fourth, venom peptides were used to manually annotate venom genes associated with the sting of the honey bee.
This of course results from the practical limitations associated with manually measuring individual grains on a microscope and/or microscope imagery.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com