Sentence examples for manually annotated using from inspiring English sources

The P. putida W619 genome was manually annotated using the MaGe annotation system (Vallenet et al., 2006) (http://www.genoscope.cns.fr/agc/website/), and compared with the well-analyzed KT2440 and automatically annotated GB-1 and F1 genomes.

The predicted gene models from the National Center for Biotechnology Information databases (NCBI RefSeq and/or NCBI ab initio) with the highest similarity for a given OXPHOS gene was then manually annotated using the APOLLO genome annotation curation tool (Lewis et al., 2002).

To characterize the major phenotypic features of the microbial community associated with L. dendroidea, features of bacterial genera identified against Genbank (through MG-Rast) were manually annotated using the Bergey's manuals of Systematic Bacteriology (2nd ed).. Additionally, we explored the relative contributions of Bacteria and Eukarya to the functional profile.

Genes in the Hox gene complex (HOM-C) and five other gene complexes were searched in silico in the D. buzzatii genome and manually annotated using available information (Negre et al. 2005), the annotated D. mojavensis and Drosophila melanogaster genomes, and the RNA-seq data generated for D. buzzatii (Negre B, Muyas F, Guillén Y, Ruiz A, in preparation).

We present the ontological foundations, target types and guidelines for entity and event annotation and introduce the new multi-level event extraction (MLEE) corpus, manually annotated using a structured representation for event extraction.

All gene models found with HMMER were manually curated, and new genes found with Wise2 were manually annotated using Fgenesh+74.

All data were manually curated and annotated using public database identifiers, for example FlyBase (Tweedie et al., 2009) for fly genes and constructs and CHEBI (de Matos et al., 2010) for small molecules including drugs.

To obtain GO annotations for proteins without existing annotation, but between 70 90% amino acid sequence identity to presumptive orthologs with GO annotation were annotated using GOanna by manually checking the similarity between our proteins and orthologs [72].

One training set is automatically annotated using scripts of the movies; another is manually labelled.

Concatenated genome contigs were annotated using the RAST pipeline [ 58] and manually curated using ARTEMIS [ 59].

WGS contigs containing DNA from the aby gene cluster were identified by BLAST searching, and were manually annotated by using Artemis sequence visualisation and annotation software 35 and BLAST search tools.