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These results are consistent with the manually annotated results.
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ADS analysed the GPRD data for cause of death, designed the Freetext Matching Algorithm, and manually annotated the results of analysis.
The other major database of curated gene expression studies, the Gene Expression Atlas (2), provides machine- rather than manually annotated data, resulting in reduced consistency of annotation across studies.
A performance evaluation on 42,870 manually annotated heading situations resulted in 99.2% of correct heading assignments.
Gene definition was manually annotated by inspecting BLASTP results and sequence alignments.
Trained annotators manually annotated each sentence as to whether it included an inclusive pronoun (per the above definition) or not and cross-checked their results to ensure reliability.
For the third test, as we did not have access to the annotator used by GoPubMed, we manually annotated 50 randomized abstracts from the results seen on GoPubMed's Web site.
Screening runs allowing mismatches were also conducted and results were manually annotated, eg, whether the pattern was long enough to tolerate mismatches or whether symmetry-breaking mismatches were not tolerated.
In order to maximize GO enrichment analysis BLAST results were manually annotated with their human orthologue abbreviated gene name (e.g. contig identified as dedicator of cytokinesis protein 5 was named as DOCK5).
To compare the result of our method with human annotation, we manually annotated ten different experiments, and in each video, the total amount of schooling time was recorded.
Table 3 shows the agreement results for our manually annotated Ansar1 data.
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