Sentence examples for manually annotated database from inspiring English sources
The metacore manually annotated database was derived from literature publications on proteins and small molecules (MetaCore™, GeneGo, St. Joseph, MI).
Please see Additional file 5: Figure S5.1 and the PANTHER website [ 28] B. MetaCore MetaCore includes a manually annotated database of gene interactions and metabolic reactions obtained from the scientific literature, including the most newly updated ones.
PubChem serves as automated repository on the biological activities of small molecules and ChEBI (Chemical Entities of Biological Interest) as a manually annotated database of molecular entities focused on 'small' chemical compounds.
We created a manually annotated database (Targeted Therapy Database, TTD) where the relevant data are gathered in a formal representation that can be computationally analyzed.
The objective of the present project is to create a manually annotated database where the relevant data are gathered in a formal representation that can be computationally analyzed for the identification of therapeutic hypotheses based on the available evidence and for ranking treatments based on the molecular profile of single patients.
MitoP2 is a manually annotated database of mitochondrial proteins that integrates computational predictions, proteome mapping, mutant screening, expression profiling, protein-protein interactions and cellular localization.
We tested this method on two manually annotated databases of polymers and reconstructed the structures de novo with a sensitivity over 90%%.
For better accuracy, manually annotated databases, miRTarBase (release 4.2) [ 22] and TransmiR (v1.1) [ 23] including only experimentally validated evidences based on literatures, were considered in the study.
We then used the subtype classification results to extract genes and pathways associated with different thyroid cancer subtypes and successfully unveiled important genes and pathways, including some instances that are missing from current manually annotated databases or most recent review articles.
Here we describe the combination of a manually annotated phenotype database, GIDEON, with the well-documented COGs database to find new associations between a certain phenotype and an organism's genotype.
We provide software and an extensive manually annotated video database used for training and testing the system.
