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The distribution includes a manual and example data.
The simulation software, instruction manual and example code are available at [ 13].
Additional information, including user's manual and example datasets is available online at http://www.epinet.se.se
An executable file, a manual and example data blocks are attached here as additional files (files 1 2 3 4 5).
Availability and implementation: The Qt/C++ software code, binaries, user manual and example datasets are available at http://cbrc.kaust.edu.sa/svamp Contact: [email protected] or [email protected] Supplementary information: Supplementary data are available at Bioinformatics online.
Availability: MTMDAT can be downloaded from the following page: http://www.cms.liu.se/chemistry/molbiotech/maria_sunnerhagens_group/mtmdat by clicking on the corresponding links (windows- or unix-based) together with the manual and example files.
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R 0 is the parameter which determines the transition from elastic to plastic braches and the recommended values are 10 20 according to the OpenSees user's manual and examples primer (Mazzoni and McKennna 2003; Mazzoni et al. 2003).
The released version has well-tested algorithms, a powerful command-line user interface that makes it easily embedded into shell scripts, and support material, including a manual and examples.
Installers, source code, user manual, and examples can be found at the COPASI website (http://www.copasi.org/Projects).org/Projects
Installers, source code, user manual, and examples can be found at the MSMB website (http://www.copasi.org/SoftwareProjects).org/SoftwareProjects
More detailed user manual and examples for the fragment abundance and coverage statistics tools will be published elsewhere.
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