Manipulation of alignment and peak files was performed using samtools version 0.1.15 [ 38] and bedtools version 2.11.2 [ 39] software.
Nine incompatible sites were removed from the pP42F dataset, resulting in 33 polymorphic sites after manipulation of the alignments; from a total of 95 polymorphic sites, 20 incompatible ones were removed from the pP89 alignment dataset.
ClustalX (Thompson et al., 1997) provides a graphical interface to the clustal multiple alignment algorithm, but does not allow manual manipulation of the alignment.
In particular, we concentrate on the use of Bioconductor tools for the representation, manipulation and visualization of alignments, including quantification, annotation and statistical modelling of the data.
Controlled manipulation of the nanotube alignment in a polymer matrix is an effective method to tune the electrical conductivity of a 5 wt.% single-walled carbon nanotube polycarbonate composite film spanning nearly four orders of magnitude.
Manipulation of molecular orientation alignment in MCTLCPs (main-chain thermotropic liquid crystalline polymers) by pure shear at nano scale has been investigated for the first time using molecular dynamics (MD) simulation.
Resulting R data structures allow manipulation of sequence, quality, alignment and other information.
Using magnetic resonance imaging (MRI), we can promote visualization of microstructures contained in small collections, as well as facilitate the manipulation and alignment of microtopographical cues in a realistic tissue environment.
Self-assembly is a technique that involves the manipulation and alignment of microparts onto a substrate without additional machinery and makes it possible to assemble a large number of small devices in parallel.
As it is hard to control the location and size of the defect in a KSiNW difficulties arise in terms of sample clamping, precise manipulation and alignment, and accurate measurement of the response (e.g., force, displacement) [15, 24] little research about effects of defects on the mechanical properties of KSiNWs has been reported.
