We give an overview of BigraphER (Bigraph Evaluator & Rewriting), an efficient implementation of bigraphs with sharing that provides manipulation, simulation and visualisation.
These frameworks, or environments, support modular model development through provision of libraries of core environmental modelling modules, as well as reusable tools for data manipulation, analysis and visualisation.
Here, we present GenomicInteractions, an R/Bioconductor [ 36] package for the manipulation, annotation and visualisation of various types of chromatin interaction data, e.g. Hi-C, ChIA-PET.
In vertebrates, this question has begun to be systematically addressed using zebrafish, a model organism that besides offering general advantages for genetic manipulation and direct visualisation of developmental processes, also reveals conspicuous asymmetries in the diencephalic epithalamus (Concha, 2004; Concha et al., 2009; Roussigne et al., 2011).
Languages such as Java have proved to be the fittest, in a Darwinian sense, because the Internet dictated that the big programming challenge was not one of artificial intelligence, but one of data manipulation, visualisation and communication between programs.
Functions such as displaying node/edge annotations, highlighting first-neighbours of nodes, and visualisation at different cut-off parameters enable manipulation of the co-expression network according to user preference.
Work has focussed on incorporating spatial relationships, calibration, and visualisation.
"CityCat" is an urban flood modelling, analysis and visualisation tool.
Right now we cover the four big areas of sales communications, gamification, predictive analytics and visualisation.
