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All data manipulation and analyses were performed using Stata software version 10.
Data manipulation and analyses were performed using SAS version 9.1.3 for Windows (SAS Institute, Cary, NC).
Data manipulation and analyses were conducted using Stata/SE version 11.0 (StataCorp, College Station, Texas, United States).
Our pipeline was implemented using BioRuby [ 15], the NCBI Toolkit and the Entrez Programming Utilities [ 16] to facilitate data manipulation and analyses.
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All analyses were performed using R statistical software [27] with geospatial manipulations and analyses performed using the 'raster' package [28].
All data and results management, manipulations and analyses were carried out using custom scripts written by J. Crawford in the statistical computing environment R unless specified otherwise.
All analyses were done using R 2.9.1 (www.r-project.org) with phylogenetic manipulations and analyses done using the packages APE [46] and Picante [47], as well as functions and scripts written by the first author (http://www.utsc.utoronto.ca/~mcadotte/R_scripts.html).html
All data manipulations and analyses were performed using R.
It also performs basic manipulations and analyses of the structures of protein ligand complexes.
Data manipulations and analyses were completed in SAS 9.0 (SAS Institute, Cary, North Carolina USA).
All manipulations and analyses were performed at the Plateforme d'expression génique du Centre de recherche du CHU de Québec.
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