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Mango transcriptome annotation.
We have established a sequence for the mango transcriptome from a pool of tissues.
Therefore, we focused on the repertoire of SSRs and SNPs in the mango transcriptome.
The mango transcriptome assembly was created and characterized by application of RNA-seq to fruit-peel samples.
Using 454-GS FLX technologyechnology we reconstructed a large portion of the 'Keitt' mango transcriptome and used it as a reference for aligning resequencing results.
The libraries were aligned with the mango transcriptome at alignment rates (mapped reads/total reads) of 90.84, 90.02, 89.48, 89.77, 90.70, 90.11, 90.25 and 90.35% for samples 1 to 8, respectively.
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In the present work, two mango accessions' transcriptomes ('Keitt', 'Tommy Atkins') were resequenced and aligned to a de-novo assembled transcriptome as a reference.
Recently, the first mango genome and transcriptome data were reported [ 21– 23].
A mango fruit peel transcriptome in response to hot water treatment, which included flavonoid genes has also been reported [ 23].
We describe a new transcriptome of mango fruit peel of cultivar Shelly.
We describe a de novo transcriptome assembly from mango cultivar 'Keitt'.
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