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We explicit the assumptions underlying the identification strategy and provide an extensive testing of their validity by making use of several European datasets.
While developing better motif and background models is important, another more general direction aims at making use of several additional information sources, in a similar manner as has been done in the context of motif discovery (see above) to improve TF binding prediction.
Specifically, we trained a logistic regression classifier on a subset of the ENCODE data, making use of several relevant covariates, including the aligned bases from other species, the local G+C content and the quality scores of neighboring bases (see Materials and Methods), and then tested the method on a separate portion of the ENCODE data.
Imaging of inflammatory sites can be achieved by making use of several different characteristics of affected tissues.
Analyses of microarray data were performed in the R environment 2.12.0 (http://www.r-project.org/) making use of several Bioconductor packages (http://www.bioconductor.org/).
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As such, it is useful to apply a ranking scheme that makes use of several different criteria and weights each criterion based on its relative importance in the overall evaluation.
He makes use of several aspects of Cubism.
The new additions will make use of several of Google's technology assets.
The Hispanic colonists after the conquest made use of several indigenous crafts for their own purposes.
The prediction framework makes use of several Gaussian approximations to quickly calculate the risk-weighted cost of a schedule.
Utility Research Garden supplies the carrots for an Oxheart dish that makes use of several varieties of them at different stages of life.
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