Sentence examples for make use of sequence from inspiring English sources

Most orthology determination methods make use of sequence comparisons: the amino acid sequences of all proteins in two species are compared with each other, and the two sequences that are most similar are considered to be orthologs.

In addition to network topology information, all network alignment algorithms excluding NETAL and MAGNA (Saraph and Milenković, 2013) make use of sequence similarity to help improve alignment accuracy.

Three other methods tested make use of sequence conservation information only: ConSurf (Landau et al., 2005), ET (Mihalek et al., 2004) and INTREPID (Sankararaman and Sjölander, 2008).

Other approaches make use of sequence similarity to reconstruct the underlying evolutionary history of genes (see, for example, Wapinski et al., 2007a, b).

We initially thought that the weightage of gene context similarity score should be much lower that of the sequence similarity as many existing methods make use of sequence similarity but not gene context similarity.

While INTREPID is designed to make use of sequence information alone, it can be used as a component in a prediction protocol that attempts to combine sequence information with other types of information.

First, we make use of sequence-derived features.

The machine learning models did not directly make use of sequences as features except the HMMs.

ConCavity can be run in two modes depending on whether it makes use of sequence conservation information or not.

A more robust test for horizontal transfer makes use of sequence data from both areas of interest.

In addition, neither of these methods makes use of sequence information in sampling conformations.