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Under all the scenarios considered in this paper, BTV-8 was predicted to have persisted in a majority of replicates.
Callosobruchus maculatus was the superior competitor in the apparent competition interaction and survived to the end of the experimental period in the majority of replicates.
If the majority of replicates indicate a significant difference, then the expected value of the test statistic is significant, and thus we treat the difference as significant.
In these cases, the result (macrocyst formation or no macrocyst formation) that was found in the majority of replicates was used, to rule out the possibility of contamination or occasional selfing.
Appendix 1 Table 1 shows the fitted fractions and variances for each of the replicates.> We see that, for the majority of replicates, the noise level lies around 0.01 (meaning a measurement error bar of about 0.1 on log-expression), but it is two and threefold higher for measurements of the genes of interest in two replicates.
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For the vast majority of replicate pairs, the R2 value was greater than or equal to 0.95, and no replicates were included with R2 < 0.92.
The majority of replicate CV median measurements for nCounter®, BioMark HD™ and OpenArray® were in the range between 5-15% which was slightly higher than the CV values observed on the Affymetrix® platform.
16 17 in supporting file S4), while the original optimal T value was preferred for up to 5% errors in almost all replicates and up to 25% errors in the majority of the replicates; for higher deletion proportions, the best T value was almost always smaller (Figs. 18 19 in supporting file S4).
In jackknife analysis of the host-based optimization, the optimal F values inferred from the complete dataset were also optimal in almost all replicates if up to 15% and still in the majority of the replicates if up to 40% of the sequences are deleted (Figs.
In jackknife analysis of the taxonomy-based optimization, the optimal F values inferred from the complete dataset were also optimal in almost all replicates if up to 10% and still in the majority of the replicates if up to 25% of the sequences are deleted (Figs.
In random permutation analysis of the taxonomy-based reference partition, the optimal F and T values inferred from the complete dataset are still optimal in almost all replicates if up to 20% and still in the majority of the replicates if up to 40% errors are introduced (Figs. 6 9 in supporting file S4).
Related(20)
lot of replicates
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