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The majority of annotated CYP genes (11 members) in P. viridis were identified as members of clan 2 (Additional file 8).
One pattern to emerge from this meta-analysis is that each network is generally inclusive, with a majority of annotated genes forming linkages into single, main networks.
Since transcription start sites have not been annotated genome-wide and the majority of annotated transcription start sites in the compact P. falciparum genome are located within 500 bp of the translation start site, we used the 500 base pair region directly upstream of the translation start codon to compute nucleosome characteristics of promoter regions.
However, many hits to dog sequences were in poorly annotated genome regions.> The majority of annotated genes were common in mouse, dog, and human datasets (shared orthologs = 12,617, shared homologs = 269,673, Figure 1).
We successfully recover the majority of annotated miRNAs and transfer RNAs (tRNAs); the long hairpins of processed primary transcripts of miRNA (pre-miRNA) and four stems of tRNAs make both relatively easy for our method to detect.
Taken together, these data indicate that the majority of annotated L. monocytogenes genes are transcribed.
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However, as shown in Table 1, either the left or right the primers did not match the majority of sequences annotated as Sneathia, Leptotrichia, Ureaplasma or Mycoplasma.
The vast majority of transcripts annotated as coding showed association with ribosomes (>92% in all species).
The vast majority of genes annotated within the prophage regions encode hypothetical proteins of unknown function.
The majority of functionally annotated proximal-distal genes showed higher expression proximally than distally.
For the majority of genes annotated as part of sequencing efforts there is no direct experimental evidence that the gene is translated into a protein.
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